Saez-Rodriguez Group

Systems Biomedicine

Exhaustively characterizing feasible logic models of a signaling network using Answer Set Programming

et al. Bioinformatics, 2014

Exhaustively characterizing feasible logic models of a signaling network using Answer Set Programming

et al. Bioinformatics, 2014

Exhaustively characterizing feasible logic models of a signaling network using Answer Set Programming

et al. Bioinformatics, 2014

Exhaustively characterizing feasible logic models of a signaling network using Answer Set Programming

et al. Bioinformatics, 2014

Exhaustively characterizing feasible logic models of a signaling network using Answer Set Programming

et al. Bioinformatics, 2014

Exhaustively characterizing feasible logic models of a signaling network using Answer Set Programming

et al. Bioinformatics, 2014

Exhaustively characterizing feasible logic models of a signaling network using Answer Set Programming

et al. Bioinformatics, 2014

Exhaustively characterizing feasible logic models of a signaling network using Answer Set Programming

et al. Bioinformatics, 2014

A community effort to assess and improve drug sensitivity prediction algorithms.

Costello et al. Nat Biotechnol, 2014

A rapidly reversible chemical dimerizer system to study lipid signaling in living cells.

Feng et al. Angew Chem Int Ed Engl, 2014

MEIGO: an open-source software suite based on metaheuristics for global optimization in systems biology and bioinformatics.

Egea et al. Bmc Bioinformatics, 2014

Network topology and parameter estimation: from experimental design methods to gene regulatory network kinetics using a community based approach.

Meyer et al. Bmc Syst Biol, 2014

PIP₃ induces the recycling of receptor tyrosine kinases.

Laketa et al. Sci Signal, 2014

Network based elucidation of drug response: from modulators to targets.

Iorio et al. Bmc Syst Biol, 2013

SBML qualitative models: a model representation format and infrastructure to foster interactions between qualitative modelling formalisms and tools.

Chaouiya et al. Bmc Syst Biol, 2013

Path2Models: large-scale generation of computational models from biochemical pathway maps.

Büchel et al. Bmc Syst Biol, 2013

BioServices: a common Python package to access biological Web Services programmatically.

Cokelaer et al. Bioinformatics, 2013

Cyrface: An interface from Cytoscape to R that provides a user interface to R packages.

Gonçalves et al. F1000Res, 2013

Exhaustively characterizing feasible logic models of a signaling network using Answer Set Programming.

Guziolowski et al. Bioinformatics, 2013

Machine learning prediction of cancer cell sensitivity to drugs based on genomic and chemical properties.

Menden et al. Plos One, 2013

Phosphoproteomics data classify hematological cancer cell lines according to tumor type and sensitivity to kinase inhibitors.

Casado et al. Genome Biol, 2013

Bridging the layers: towards integration of signal transduction, regulation and metabolism into mathematical models.

Gonçalves et al. Mol Biosyst, 2013

Critical assessment of automated flow cytometry data analysis techniques.

Aghaeepour et al. Nat Methods, 2013

Evaluation of methods for modeling transcription factor sequence specificity.

Weirauch et al. Nat Biotechnol, 2013

CySBGN: a Cytoscape plug-in to integrate SBGN maps.

Gonçalves et al. Bmc Bioinformatics, 2013